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Shedd Aquarium Research Expert Shayle Matsuda, Ph.D.

Shayle Matsuda

Research Biologist

Shayle Matsuda is a microbial ecologist researching how microbes impact coral reef and freshwater ecology and conservation under climate change.

Education

Ph.D. Marine Biology, University of Hawaiʻi Mānoa and the Hawaiʻi Institute of Marine Biology

M.Sc. Biology: Ecology, Evolution, and Conservation Biology, San Francisco State University and the California Academy of Sciences

B.A. Environmental Studies and Women’s Studies, University of California Santa Cruz

Shayle Matsuda, Ph.D., serves as an aquatic microbial ecologist in Shedd's Conservation and Research Department. His research focuses on microorganisms' diversity, ecology, and physiology at individual (host-microbe interactions), species, and ecosystem levels. The aim is to enhance the scale and efficiency of conservation and restoration efforts in coral reefs and urban freshwater ecosystems amid climate change.

In coral reefs, Matsuda's research concentrates on coral symbioses, exploring complex partnerships between corals and their symbiotic algae and bacteria. His work involves developing innovative methods to enhance coral thermal tolerance and understanding the microbial basis of thermal resilience. He extensively studies the physiological impacts of ocean warming on coral traits within species and reef ecosystems in the Pacific. Using 'omics, he delves into microbial relationships and their role in the holobiont's stress response. Matsuda specializes in coral-algal symbioses, researching scalable approaches to pairing coral larvae with more thermally resistant algae. His expertise in coral spawning and propagation has contributed to efficiency and survivorship improvements. He actively conducts field research in Hawaiʻi, Florida, and Mo'orea, dividing his time between these locations and Shedd’s Microbiome Lab.

In freshwater ecosystems, Matsuda examines the Chicago River's urbanization impact. His research studies microbial community shifts in response to pollution input, climate change-induced weather pattern shifts, and on-the-ground conservation interventions.

Matsuda earned his Ph.D. in marine biology from the University of Hawaiʻi Mānoa and the Hawaiʻi Institute of Marine Biology, his MSc in biology from San Francisco State University and the California Academy of Sciences, and his BA from the University of California Santa Cruz with a double major in environmental studies and women’s studies. As an avid science communicator and advocate, Matsuda supports diversity, equity, inclusion, and justice in STEM and serves on the Brain Trust for the national Inclusive Science Communication Symposium.

See Publications


Symbiont-mediated tradeoffs between growth and heat tolerance are modulated by light and temperature in the coral Montipora capitata

Matsuda, S.B., Opalek, M.L., Ritson-Williams, R., Gates, R.D., & Cunning, R. (2023). Symbiont-mediated tradeoffs between growth and heat tolerance are modulated by light and temperature in the coral Montipora capitata. Coral Reefs, 42, 1385-1394. https://doi.org/10.1007/s00338-023-02441-0

Centering transgender and gender non-conforming experience, access, & safety in ecological fieldwork

Matsuda, S.B. (2023). Centering transgender and gender non-conforming experience, access, & safety in ecological fieldwork. Integrative and Comparative Biology, 63, 86-97. https://doi.org/10.1093/icb/icad017

Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales

Roach, T.N.F., Matsuda, S., Matin, C.H., Huckeba, J., Huckeba, G., Kahkejian, V., Santoro, E.P., Drury C., & Quinn, R. (2023). Single-polyp metabolomics reveals biochemical structuring of the coral holobiont at multiple scales. Communications Biology, Sep 26;6(1):984. https://www.nature.com/articles/s42003-023-05342-8